Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
HNSC rs75878387 chr1:36265122 T/G 1.26E-13 508 21.23 27.43 3.02 KM Plot
HNSC rs7595318 chr2:99899313 T/G 9.2E-7 513 7 20.77 22.27 KM Plot
HNSC rs75996230 chr19:2410919 T/A 1.6E-14 506 22.15 21.37 2.55 KM Plot
HNSC rs7599843 chr2:99885848 C/G 8.59E-7 514 7 20.48 22.27 KM Plot
HNSC rs76002135 chr21:48068809 G/A 4.04E-9 514 21.52 21.5 2.73 KM Plot
HNSC rs7602401 chr2:99828818 G/A 3.67E-8 513 6.83 19.33 22.2 KM Plot
HNSC rs7603388 chr2:99904336 G/T 9.2E-7 513 7 20.77 22.27 KM Plot
HNSC rs76062475 chr21:48078001 G/A 4.71E-9 513 21.52 21.02 2.73 KM Plot
HNSC rs7606279 chr2:99902066 T/C 6.03E-7 512 7 20.78 22.27 KM Plot
HNSC rs76157271 chr12:122347568 T/C 4.75E-5 511 21.77 24.15 14.77 KM Plot
HNSC rs76362706 chr21:48072374 T/C 4.18E-9 514 21.52 21.5 2.73 KM Plot
HNSC rs7647327 chr3:161016421 T/C 3.21E-5 512 24 24.12 17.47 KM Plot
HNSC rs765620 chr4:140296622 C/T 5.07E-6 514 20.73 27.32 18.3 KM Plot
HNSC rs7662484 chr4:140387375 C/T 5.19E-6 492 18.1 26.83 20.53 KM Plot
HNSC rs7664699 chr4:110760941 A/G 2.75E-5 504 16.63 23.93 22.33 KM Plot